Brain Iron Imaging Markers in the Presence of White Matter Hyperintensities – ISMRM 2020 Poster Session


HIV-infected individuals are at increased risk of developing white matter hyperintensities (WMHs), which can lead to increased iron deposition in deep gray matter structures. In this abstract, we evaluate three region of interest (ROI) brain iron metrics and introduce a novel population-based whole-brain iron metric, the expected iron coefficient (EIC), derived from quantitative susceptibility mapping (QSM) in the context of HIV and mild WMH burden. While the ROI metrics did not show any significant differences between cohorts, the EIC was able to detect iron related differences in a cohort with WMH burden, due to increased statistical power.


Excessive iron accumulation in deep grey matter (DGM) is implicated in several neurogenerative diseases predominantly affecting the white matter. (1) It has been reported that iron accumulation in DGM may contribute to neurodegeneration through the generation of reactive oxygen species and may be associated with white matter hyperintensities (WMHs). (2) Quantitative susceptibility mapping (QSM) and R2* mapping are some of the most sensitive MRI techniques for studying brain iron. (3) Here we evaluate three iron sensitive markers (QSM, R2*, and iron microenvironment coefficient (IMC) (4)) and introduce a novel population-based marker, expected iron coefficient (EIC), reflective of iron deposition, in the presence of HIV-infection and mild WMH burden.


We propose the EIC as a novel whole brain iron marker to detect subtle changes in iron deposition in the presence of white matter disease that cannot otherwise be detected with standard region-of-interest (ROI) or voxel-based based approaches. The EIC is calculated for each population by regressing the average QSM values of each subject in a cohort against the ROI- based expected iron depositions (EID) across the brain:

χ = EIC*EID + ρ

where is the mean susceptibility in ppb, is a linear combination of related clinical covariates, and the EID, in mg non-haemin iron per 100g fresh weight, is calculated for each ROI in Hallgren et al. (5) in which a, b, and c are region specific constants and t is age in years:

EID = a(1 – e^(-bt)) + c

Differences in EIC between populations reflect deviations in typical iron deposition across the brain in the context of particular pathologies. The EIC combines the statistical power of multiple brain regions to detect iron-related differences between cohorts.

In an ongoing study, 100 subjects (mean± SD age = 52.0 ± 14.7 years, range = 19 – 78 years) were evaluated and divided into four cohorts (HC, HC:F>0, HIV, and HIV:F>0) based on HIV-status and WMH presence to study the effects of cerebrovascular disease in HIV patients (Table 1). All imaging was conducted on a 3T (Siemens Prisma) scanner equipped with a 64-channel head coil (Erlangen, Germany). The protocol includes high-resolution T1-weighted (T1w) anatomical images using the MPRAGE sequence (TI=950ms, TE/TR=3.87ms/1,620ms, 1mm isotropic resolution). QSM data was acquired with a 3D mGRE pulse sequence (8-echo bi-polar readout train, TE of 1st echo=2.7ms, TR=62ms, echo spacing =1.5ms, bandwidth=930Hz/pixel, voxel size=0.94×0.94×2mm3). QSM and R2* maps were calculated using the Morphology Enabled Dipole Inversion with zero-tissue referencing (MEDI+0) toolbox, with default settings. (6-9) T1w images were used for registration to MNI152 2mm space. The caudate (CAU), putamen (PUT), globus pallidus (PAL), thalamus (THA), prefrontal area, frontal white matter, and parietal lobes were selected as ROIs and applied as masks in native QSM space by the JHU and Harvard-Oxford atlases available in FSL. (10) Paired-sample t-tests and ANCOVA analyses were conducted to evaluate the QSM, R2*, IMC and EIC markers in the presence of mild WMHs.


DGM ROIs and example R2* and QSM maps are presented in Figure 1. Figure 2 shows the group means of the IMC, QSM, and R2* metrics. After false discovery rate correction, none of the ROI metrics showed any significant cohort differences. Figure 3 shows a scatterplot of the mean susceptibility versus EID per region. Regression slopes reflect the EIC for each cohort. An F-test comparing multivariate full and restricted models showed equal variance between overall models. T-tests of EICs between cohorts showed that the HC and HIV cohorts were significantly different from the HC:F>0 cohort (p=0.000072). No other EIC comparisons showed significant differences.


Table 1: Study demographic information. Where appropriate values are given as mean (SD). Cohorts are named as follows: HC – Healthy Controls; HIV – Patients with HIV infection; F>0 – Deep and periventricular Fazekas scores are greater than 0.


Figure 1. A. Regions of interest considered for analyses. CAU – Green; PUT – Blue; PAL – Red; THA – Purple. B. An example R2* map of one healthy control, range 0 – 40 s example QSM map of one healthy control, range -200 – 200 ppb. All images are displayed in MNI152 2mm space.

Figure 2. Bar plots of the mean ROI metric values with standard deviation for each ROI considered. Absolute QSM values are plotted for visualization.
Expected Iron Coefficient

Figure 3. Scatterplot of QSM vs. EID considering all ROIs. Linear regression formulas are displayed for each cohort. The slope of each regression line represents the EIC.


The results show that there is no significant difference between any of the cohorts using any ROI-based metric. QSM, R2*, and the IMC are thought to be measures sensitive to changes in iron deposition and distribution. The IMC additionally provides information about the mesoscopic properties of iron distribution in DGM, which are not significantly different in the presence of HIV nor WMHs.

We introduce a new population-based brain iron imaging marker, EIC, which is the regression slope between QSM and EID across the entire brain, to detect iron deposition effects between populations. Since the EIC is the slope between QSM and EID, which is a function of age, the EIC cannot increase or decrease with respect to age. Rather, the EIC can only deviate from healthy aging due to an underlying condition. Due to its utilization of multiple instead of individual ROIs, with increased statistical power, it is shown to be able to detect more subtle deviations in iron deposition in the presence of WMHs.


In this study we evaluated four iron-related imaging markers to find effects of HIV and mild WMH burden. We found that while no significant differences were identified in ROI-based markers, the introduced group-level imaging marker EIC was able to find significant differences between healthy controls and patients with mild WMH burden. While the limitations of interpretation of this new marker are still being explored, we believe the increased EIC reflects increased iron deposition in the context of WMHs.


Kyle Murray, Madalina Tivarus, Giovanni Schifitto, Md Nasir Uddin, and Jianhui Zhong

University of Rochester


This work was made possible by the NIH 5R01AG054328-03 grant. We would also like to acknowledge the study coordinators and study participants.


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